Statistics
These were last updated on the 01-03-2024.
Web of science:
- citations: 15,570
- h-index: 46
Google scholar:
- citations: 40,144
- h-index: 65
- h10-index: 108
List of publications
This list was last updated on the 01-01-2024. It does not include the (many) papers on COVID-19 under the CMMID group authorship.
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Evans B, Keiser O, Kaiser L, Jombart T (2023) Analysis of global routine immunisation coverage shows disruption and stagnation during the first two-years of the COVID-19 pandemic with tentative recovery in 2022. Vaccine X 100383
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Qian GY, Edmunds JW, Bausch DG, Jombart T (2023) A mathematical model of Marburg virus disease outbreaks and the potential role of vaccination in control. BMC Medicine 21(1):439.
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Geismar C, Nguyen V, Fragaszy E, Shrotri M, Navaratnam AMD, Beale S, Byrne TE, Fong WLE, Yavlinsky A, Kovar J, Hoskins S, Braithwaite I, Aldridge RW, Hayward AC, White PJ, Jombart T, Cori A (2023) Bayesian reconstruction of SARS-CoV-2 transmissions highlights substantial proportion of negative serial intervals. Epidemics 100713
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Zeng W, Mobula L, Samaha H, Yao M, Ahuka S, Wilkinson T, Jombart T et al. (2023) Cost of public health interventions to respond to the 10th Ebola outbreak in the Democratic Republic of the Congo. BMJ Global Health 8(10):e012660
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Qian GY, Jombart T, Edmunds JW (2023) Assessing the feasibility of Phase 3 vaccine trials against Marburg Virus Disease: A modelling study. Vaccine X 14:100321.
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Evans B, Jombart T (2022) Worldwide routine immunisation coverage regressed during the first year of the COVID-19 pandemic. Vaccine 40(26):3531-3535. doi: 10.1016/j.vaccine.2022.01.044
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Jombart T (2021) Why development of outbreak analytics tools should be valued, supported, and funded. Lancet ID 21:4, 458-459.
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Abbas M, Robalo Nunes T, Cori A, Cordey S, Laubscher F, Baggio S, Jombart T, et al. (2021) Explosive nosocomial outbreak of SARS-CoV-2 in a rehabilitation clinic: the limits of genomics for outbreak reconstruction. J Hosp Infect 117:124-134
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Brooks-Pollock E, Danon L, Jombart T, Pellis L. (2021) Modelling that shaped the early COVID-19 pandemic response in the UK. Philos Trans R Soc Lond B Biol Sci. 2021;376: 20210001. https://doi.org/10.1098/rstb.2021.0001
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Jombart T, Ghozzi S, Schumacher D, Taylor TJ, Leclerc QJ, Jit M, et al. (2021) Real-time monitoring of COVID-19 dynamics using automated trend fitting and anomaly detection. Philos Trans R Soc Lond B Biol Sci. 2021;376: 20200266.https://doi.org/10.1098/rstb.2020.0266
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Campbell F, Archer B, Laurenson-Schafer H, Jinnai Y, Konings F, Batra N, Pavlin B, Vandemale K, Van Kerkhove M, Jombart T et al. (2021) Increased transmissibility and global spread of SARS-CoV-2 variants of concern as at June 2021. Euro Surveill. 2021;26. https://doi.org/10.2807/1560-7917.ES.2021.26.24.2100509
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Leclerc QJ, Nightingale ES, Abbott S, CMMID COVID-19 Working Group, Jombart T (2021) Analysis of temporal trends in potential COVID-19 cases reported through NHS Pathways England. Scientific Reports. 2021;11: 7106. https://doi.org/10.1038/s41598-021-86266-3
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Carter SE, Gobat N, Pfaffmann Zambruni J, Bedford J, van Kleef E, Jombart T, et al. (2021) What questions we should be asking about COVID-19 in humanitarian settings: perspectives from the Social Sciences Analysis Cell in the Democratic Republic of the Congo. BMJ Global Health 2020;5:e003607. 10.1136/bmjgh-2020-003607
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Rees EM, Nightingale ES, Jafari Y, Waterlow NR, Clifford S, B Pearson CA, Jombart T et al. (2020) COVID-19 length of hospital stay: a systematic review and data synthesis. BMC Med. 2020;18: 270.https://doi.org/10.1186/s12916-020-01726-3
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Mobula LM, Samaha H, Yao M, Gueye AS, Diallo B, Umutoni C, Anoko J, Lokonga JP, Minikulu L, Mossoko M, Bruni E, Carter S, Jombart T, et al. (2020) Recommendations for the COVID-19 Response at the National Level Based on Lessons Learned from the Ebola Virus Disease Outbreak in the Democratic Republic of the Congo. The American Journal of Tropical Medicine and Hygiene: 12–17. doi:10.4269/ajtmh.20-0256
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Parisi A, Phuong TLT, Mather AE, Jombart T, Tuyen HT, Lan NPH, et al. (2020) The role of animals as a source of antimicrobial resistant nontyphoidal Salmonella causing invasive and non-invasive human disease in Vietnam. Infect Genet Evol. 2020;85: 104534.
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Jit M, Jombart T, Nightingale ES, et al. 2020. Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, United Kingdom, February to March 2020. Euro Surveill. 25(18):2000632. doi:10.2807/1560-7917.ES.2020.25.18.2000632
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Jombart T, van Zandvoort K, Russell TW et al. Inferring the number of COVID-19 cases from recently reported deaths. Wellcome Open Res 2020, 5:78 10.12688/wellcomeopenres.15786.1
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Jombart T, Jarvis CI, Mesfin S, Tabal N, Mossoko M, Mpia LM, Abedi A, Chene S, Forbin EE, Belizaire MRD, de Radiguès X, Ngombo R, Tutu Y, Finger F, Crowe M, Edmunds WJ, Nsio J, Yam A, Diallo B, Gueye AS, Ahuka-Mundeke S, Yao M, Fall IS (2020) The cost of insecurity: from flare-up to control of a major Ebola virus disease hotspot during the outbreak in the Democratic Republic of the Congo, 2019. Eurosurveillance 25(2). 10.2807/1560-7917.ES.2020.25.2.1900735
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Leiva, C. et al. Population substructure and signals of divergent adaptive selection despite admixture in the sponge Dendrilla antarctica from shallow waters surrounding the Antarctic Peninsula. Molecular Ecology (2019). DOI: 10.1111/mec.15135
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Campbell F, Cori A, Ferguson N, Jombart T (2019) Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data. PLoS Comput Biol 15(3): e1006930. DOI:10.1371/journal.pcbi.1006930
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Dighe, A., Jombart, T., Van Kerkhove, M. D. & Ferguson, N. (2019) A systematic review of MERS-CoV seroprevalence and RNA prevalence in dromedary camels: Implications for animal vaccination Epidemics 100350. DOI: 10.1016/j.epidem.2019.100350
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Thomas R. Sewell, Jianing Zhu, Johanna Rhodes, Ferry Hagen, Jacques F. Meis, Matthew C. Fisher, Thibaut Jombart Nonrandom Distribution of Azole Resistance across the Global Population of Aspergillus fumigatus (2019) mBio 10 (3) e00392-19; DOI: 10.1128/mBio.00392-19
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Kamvar ZN, Cai J, Pulliam JRC, Schumacher J & Jombart T (2019) Epidemic curves made easy using the R package incidence. F1000Res 8: 139.
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Polonsky JA, Baidjoe A, Kamvar ZN, Cori A, Durski K, Edmunds JW, Eggo RM, Funk S, Kaiser L, Keating P, le Polain de Waroux O, Marks M, Moraga P, Morgan O, Nouvellet P, Ratnayake R, Roberts CH, Whitworth J & Jombart T (2019). Outbreak analytics: a developing data science for informing the response to emerging pathogens Philosophical Transactions B 374 (1776). DOI: 10.1098/rstb.2018.0276
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Cori A, Nouvellet P, Garske T, Bourhy H, Nakouné E & Jombart T (2018). A graph-based evidence synthesis approach to detecting outbreak clusters: an application to dog rabies PLoS Computational Biology DOI: 10.1371/journal.pcbi.1006554
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Campbell F, Didelot X, FitzJohn R, Ferguson N, Cori A & Jombart T (2018). outbreaker2: a modular platform for outbreak reconstruction BMC Bioinformatics doi:10.1186/s12859-018-2330-z
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Campbell, F., Strang, C., Ferguson, N., Cori, A. & Jombart, T. (2018). When are pathogen genome sequences informative of transmission events? PLoS Pathogens doi:10.1371/journal.ppat.1006885
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Montano, V., & Jombart, T. (2017). An Eigenvalue test for spatial principal component analysis. BMC Bioinformatics, 18(1), 562. doi:10.1186/s12859-017-1988-y
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Paradis, E., Gosselin, T., Grunwald, N. J., Jombart, T., Manel, S., & Lapp, H. (2017). Towards an integrated ecosystem of R packages for the analysis of population genetic data. Molecular Ecology Resources, 17(1), 1-4. doi:10.1111/1755-0998.12636
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Dupuis, J. R., Bremer, F. T., Jombart, T., Sim, S. B., & Geib, S. M. (2017). mvmapper: Interactive spatial mapping of genetic structures.. Mol Ecol Resour. doi:10.1111/1755-0998.12724
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Jombart, T., Kendall, M., Almagro-Garcia, J., & Colijn, C. (2017). treespace: Statistical exploration of landscapes of phylogenetic trees. Molecular Ecology Resources, 17(6), 1385-1392. doi:10.1111/1755-0998.12676
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Cori, A., Donnelly, C. A., Dorigatti, I., Ferguson, N. M., Fraser, C., Garske, T., … Blake, I. M. (2017). Key data for outbreak evaluation: building on the Ebola experience. Philosophical Transactions of the Royal Society B-Biological Sciences, 372(1721), 14 pages. doi:10.1098/rstb.2016.0371
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Garske, T., Cori, A., Ariyarajah, A., Blake, I. M., Dorigatti, I., Eckmanns, T., … Donnelly, C. A. (2017). Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013-2016. Philosophical Transactions of the Royal Society B-Biological Sciences, 372(1721), 9 pages. doi:10.1098/rstb.2016.0308
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Nouvellet, P., Cori, A., Garske, T., Blake, I. M., Dorigatti, I., Hinsley, W., … Riley, S. (2017). A simple approach to measure transmissibility and forecast incidence.. Epidemics. doi:10.1016/j.epidem.2017.02.012
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Bertranpetit, E., Jombart, T., Paradis, E., Pena, H., Dubey, J., Su, C., … Ajzenberg, D. (2017). Phylogeography of Toxoplasma gondii points to a South American origin. Infection Genetics and Evolution, 48, 150-155. doi:10.1016/j.meegid.2016.12.020
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Agua-Agum, J., Ariyarajah, A., Aylward, B., Bawo, L., Bilivogui, P., Blake, I. M., … Yoti, Z. (2016). Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study. PLoS Medicine, 13(11), 23 pages. doi:10.1371/journal.pmed.1002170
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Inns, T., Ashton, P. M., Herrera-Leon, S., Lighthill, J., Foulkes, S., Jombart, T., … Vivancos, R. (2017). Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis. EPIDEMIOLOGY AND INFECTION, 145(2), 289-298. doi:10.1017/S0950268816001941
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Clare, F. C., Halder, J. B., Daniel, O., Bielby, J., Semenov, M. A., Jombart, T., … Fisher, M. C. (2016). Climate forcing of an emerging pathogenic fungus across a montane multi-host community. Philosophical Transactions of the Royal Society B-Biological Sciences, 371(1709), 8 pages. doi:10.1098/rstb.2015.0454
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Paradis, E., Gosselin, T., Goudet, J., Jombart, T., & Schliep, K. (2017). Linking genomics and population genetics with R. Molecular Ecology Resources, 17(1), 54-66. doi:10.1111/1755-0998.12577
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Dallman, T., Inns, T., Jombart, T., Ashton, P., Loman, N., Chatt, C., … Cleary, P. (2016). Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network.. Microb Genom, 2(8), e000070. doi:10.1099/mgen.0.000070
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Jombart, T., Archer, F., Schliep, K., Kamvar, Z., Harris, R., Paradis, E., … Lapp, H. (2017). apex: phylogenetics with multiple genes. MOLECULAR ECOLOGY RESOURCES, 17(1), 19-26. doi:10.1111/1755-0998.12567
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Agua-Agum, J., Allegranzi, B., Ariyarajah, A., Aylward, R. B., Blake, I. M., Barboza, P., … Van Kerkhove, M. D. (2016). After Ebola in West Africa - Unpredictable Risks, Preventable Epidemics. NEW ENGLAND JOURNAL OF MEDICINE, 375(6), 587-596. doi:10.1056/NEJMsr1513109
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Cauchemez, S., Nouvellet, P., Cori, A., Jombart, T., Garske, T., Clapham, H., … Ferguson, N. M. (2016). Unraveling the drivers of MERS-CoV transmission. Proceedings of the National Academy of Sciences of the United States of America, 113(32), 9081-9086. doi:10.1073/pnas.1519235113
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Lessler, J., Salje, H., Van Kerkhove, M. D., Ferguson, N. M., Cauchemez, S., Rodriquez-Barraquer, I., … Cummings, D. A. T. (2016). Estimating the Severity and Subclinical Burden of Middle East Respiratory Syndrome Coronavirus Infection in the Kingdom of Saudi Arabia. American Journal of Epidemiology, 183(7), 657-663. doi:10.1093/aje/kwv452
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Agua-Agum, J., Ariyarajah, A., Blake, I. M., Cori, A., Donnelly, C. A., Dorigatti, I., … Van Kerkhove, M. D. (2016). Ebola Virus Disease among Male and Female Persons in West Africa. New England Journal of Medicine, 374(1), 96-98. doi:10.1056/NEJMc1510305
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Karkey, A., Jombart, T., Walker, A. W., Thompson, C. N., Torres, A., Dongol, S., … Baker, S. (2016). The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. PLoS Neglected Tropical Diseases, 10(1), 18 pages. doi:10.1371/journal.pntd.0004346
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Finnie, T. J. R., South, A., Bento, A., Sherrard-Smith, E., & Jombart, T. (2016). EpiJSON: A unified data-format for epidemiology. EPIDEMICS, 15, 20-26. doi:10.1016/j.epidem.2015.12.002
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Nouvellet, P., Garske, T., Mills, H. L., Nedjati-Gilani, G., Hinsley, W., Blake, I. M., … Ferguson, N. M. (2015). The role of rapid diagnostics in managing Ebola epidemics. Nature, 528(7580), S109-S116. doi:10.1038/nature16041
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Jombart, T., Kendall, M. L., Almagro-Garcia, J., & Colijn, C. (2015). treespace (Version 1.0.0) [Computer Software].
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Weinert, L. A., Chaudhuri, R. R., Wang, J., Peters, S. E., Corander, J., Jombart, T., … Maskell, D. J. (2015). Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (vol 6, 6740, 2015). NATURE COMMUNICATIONS, 6, 1 page. doi:10.1038/ncomms8272
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Weinert, L. A., Chaudhuri, R. R., Wang, J., Peters, S. E., Corander, J., Jombart, T., … Maskell, D. J. (2015). Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. NATURE COMMUNICATIONS, 6, 9 pages. doi:10.1038/ncomms7740
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Agua-Agum, J., Ariyarajah, A., Blake, I. M., Cori, A., Donnelly, C. A., Dorigatti, I., … Van Kerkhove, M. D. (2015). Ebola Virus Disease among Children in West Africa. NEW ENGLAND JOURNAL OF MEDICINE, 372(13), 1274-1277. doi:10.1056/NEJMc1415318
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Hao, C. T., Karkey, A., Duy, P. T., Boinett, C. J., Cain, A. K., Ellington, M., … Baker, S. (2015). A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO Molecular Medicine, 7(3), 227-239.
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West African Ebola Epidemic after One Year - Slowing but Not Yet under Control (2015). New England Journal of Medicine, 372(6), 584-587. doi:10.1056/NEJMc1414992
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Tong, S. Y. C., Holden, M. T. G., Nickerson, E. K., Cooper, B. S., Koeser, C. U., Cori, A., … Peacock, S. J. (2015). Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting. GENOME RESEARCH, 25(1), 111-118. doi:10.1101/gr.174730.114
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Nhung, N. T., Cuong, N. V., Campbell, J., Hoa, N. T., Bryant, J. E., Truc, V. N. T., … Carrique-Mas, J. (2015). High Levels of Antimicrobial Resistance among Escherichia coli Isolates from Livestock Farms and Synanthropic Rats and Shrews in the Mekong Delta of Vietnam. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(3), 812-820. doi:10.1128/AEM.03366-14
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Aylward, B., Barboza, P., Bawo, L., Bertherat, E., Bilivogui, P., Blake, I., … Yoti, Z. (2014). Ebola Virus Disease in West Africa - The First 9 Months of the Epidemic and Forward Projections. NEW ENGLAND JOURNAL OF MEDICINE, 371(16), 1481-1495. doi:10.1056/NEJMoa1411100
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Mita, T., & Jombart, T. (2015). Patterns and dynamics of genetic diversity in Plasmodium falciparum: What past human migrations tell us about malaria. Parasitology International, 64(3), 238-243. doi:10.1016/j.parint.2014.09.007
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Devillard, S., Jombart, T., Leger, F., Pontier, D., Say, L., & Ruette, S. (2014). How reliable are morphological and anatomical characters to distinguish European wildcats, domestic cats and their hybrids in France?. Journal of Zoological Systematics and Evolutionary Research, 52(2), 154-162. doi:10.1111/jzs.12049
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Jombart, T., Aanensen, D. M., Baguelin, M., Birrell, P., Cauchemez, S., Camacho, A., … Ferguso, N. (2014). OutbreakTools: A new platform for disease outbreak analysis using the R software. EPIDEMICS, 7, 28-34. doi:10.1016/j.epidem.2014.04.003
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Jombart, T., Cori, A., Didelot, X., Cauchemez, S., Fraser, C., & Ferguson, N. (2014). Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. PLOS COMPUTATIONAL BIOLOGY, 10(1), 14 pages. doi:10.1371/journal.pcbi.1003457
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Tanabe, K., Jombart, T., Horibe, S., Palacpac, N. M. Q., Honma, H., Tachibana, S. -I., … Mita, T. (2013). Plasmodium falciparum mitochondrial genetic diversity exhibits isolation-by-distance patterns supporting a sub-Saharan African origin. MITOCHONDRION, 13(6), 630-636. doi:10.1016/j.mito.2013.08.008
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Chadeau-Hyam, M., Campanella, G., Jombart, T., Bottolo, L., Portengen, L., Vineis, P., … Vermeulen, R. C. H. (2013). Deciphering the complex: Methodological overview of statistical models to derive OMICS-based biomarkers. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, 54(7), 542-557. doi:10.1002/em.21797
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Huyse, T., Van den Broeck, F., Jombart, T., Webster, B. L., Diaw, O., Volckaert, F. A. M., … Polman, K. (2013). Regular treatments of praziquantel do not impact on the genetic make-up of Schistosoma mansoni in Northern Senegal. INFECTION GENETICS AND EVOLUTION, 18, 100-105. doi:10.1016/j.meegid.2013.05.007
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Tanabe, K., Mita, T., Palacpac, N. M. Q., Arisue, N., Tougan, T., Kawai, S., … Horii, T. (2013). Within-population genetic diversity of Plasmodium falciparum vaccine candidate antigens reveals geographic distance from a Central sub-Saharan African origin. VACCINE, 31(9), 1334-1339. doi:10.1016/j.vaccine.2012.12.039
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Cui, Y., Yu, C., Yan, Y., Li, D., Li, Y., Jombart, T., … Yang, R. (2013). Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. Proceedings of the National Academy of Sciences of the United States of America, 110(2), 577-582. doi:10.1073/pnas.1205750110
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Muenkemueller, T., Lavergne, S., Bzeznik, B., Dray, S., Jombart, T., Schiffers, K., & Thuiller, W. (2012). How to measure and test phylogenetic signal. Methods in Ecology and Evolution, 3(4), 743-756. doi:10.1111/j.2041-210X.2012.00196.x
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Dray, S., Pelissier, R., Couteron, P., Fortin, M. -J., Legendre, P., Peres-Neto, P. R., … Wagner, H. H. (2012). Community ecology in the age of multivariate multiscale spatial analysis. ECOLOGICAL MONOGRAPHS, 82(3), 257-275. doi:10.1890/11-1183.1
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Yalcindag, E., Elguero, E., Arnathau, C., Durand, P., Akiana, J., Anderson, T. J., … Prugnolle, F. (2012). Multiple independent introductions of Plasmodium falciparum in South America. Proceedings of the National Academy of Sciences of the United States of America, 109(2), 511-516. doi:10.1073/pnas.1119058109
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Dray, S., & Jombart, T. (2011). revisiting guerry’s data: introducing spatial constraints in multivariate analysis. Snnals of Applied Statistics, 5(4), 2278-2299. doi:10.1214/10-AOAS356
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Rasmussen, M., Guo, X., Wang, Y., Lohmueller, K. E., Rasmussen, S., Albrechtsen, A., … Willerslev, E. (2011). An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. SCIENCE, 334(6052), 94-98. doi:10.1126/science.1211177
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Jombart, T., & Ahmed, I. (2011). adegenet 1.3-1: new tools for the analysis of genome-wide SNP data. BIOINFORMATICS, 27(21), 3070-3071. doi:10.1093/bioinformatics/btr521
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Morelli, G., Song, Y., Mazzoni, C. J., Eppinger, M., Roumagnac, P., Wagner, D. M., … Achtman, M. (2010). Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. NATURE GENETICS, 42(12), 1140-+. doi:10.1038/ng.705
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Jombart, T., Devillard, S., & Balloux, F. (2010). Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC GENETICS, 11, 15 pages. doi:10.1186/1471-2156-11-94
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Tanabe, K., Mita, T., Jombart, T., Eriksson, A., Horibe, S., Palacpac, N., … Balloux, F. (2010). Plasmodium falciparum Accompanied the Human Expansion out of Africa. CURRENT BIOLOGY, 20(14), 1283-1289. doi:10.1016/j.cub.2010.05.053
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Jombart, T., Eggo, R. M., Dodd, P. J., & Balloux, F. (2011). Reconstructing disease outbreaks from genetic data: a graph approach. HEREDITY, 106(2), 383-390. doi:10.1038/hdy.2010.78
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Jombart, T., Balloux, F., & Dray, S. (2010). adephylo: new tools for investigating the phylogenetic signal in biological traits. BIOINFORMATICS, 26(15), 1907-1909. doi:10.1093/bioinformatics/btq292
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Jombart, T., Pavoine, S., Devillard, S., & Pontier, D. (2010). Putting phylogeny into the analysis of biological traits: A methodological approach. JOURNAL OF THEORETICAL BIOLOGY, 264(3), 693-701. doi:10.1016/j.jtbi.2010.03.038
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Nuebel, U., Dordel, J., Kurt, K., Strommenger, B., Westh, H., Shukla, S. K., … Witte, W. (2010). A Timescale for Evolution, Population Expansion, and Spatial Spread of an Emerging Clone of Methicillin-Resistant Staphylococcus aureus. PLOS PATHOGENS, 6(4), 12 pages. doi:10.1371/journal.ppat.1000855
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Balloux, F., Handley, L. -J. L., Jombart, T., Liu, H., & Manica, A. (2009). Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 276(1672), 3447-3455. doi:10.1098/rspb.2009.0752
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Fraser, C., Donnelly, C. A., Cauchemez, S., Hanage, W. P., Van Kerkhove, M. D., Hollingsworth, T. D., … Ferguson, N. M. (2009). Influenza: Making Privileged Data Public Response. SCIENCE, 325(5944), 1072-1073. doi:10.1126/science.325_1072b
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Fraser, C., Donnelly, C. A., Cauchemez, S., Hanage, W. P., Van Kerkhove, M. D., Hollingsworth, T. D., … Roth, C. (2009). Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings. SCIENCE, 324(5934), 1557-1561. doi:10.1126/science.1176062
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Jombart, T., Pontier, D., & Dufour, A. -B. (2009). Genetic markers in the playground of multivariate analysis. HEREDITY, 102(4), 330-341. doi:10.1038/hdy.2008.130
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Jombart, T., Dray, S., & Dufour, A. -B. (2009). Finding essential scales of spatial variation in ecological data: a multivariate approach. ECOGRAPHY, 32(1), 161-168. doi:10.1111/j.1600-0587.2008.05567.x
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Jombart, T., Eggo, R. M., Dodd, P., & Balloux, F. (2009). Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic.. PLoS Curr, 1, RRN1026.
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Devillard, S., Jombart, T., & Pontier, D. (2009). Revealing cryptic genetic structuring in an urban population of stray cats (Felis silvestris catus). MAMMALIAN BIOLOGY, 74(1), 59-71. doi:10.1016/j.mambio.2008.01.001
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Christophe, F., Christl, A. D., Cauchemez, S., Hanage, W. P., Van Kerkhove, M. D., Hollingsworth, T. D., … Ferguson, N. M. (2009). Response. Science, 325(5944), 1072-1073.
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Jombart, T., Devillard, S., Dufour, A. -B., & Pontier, D. (2008). Revealing cryptic spatial patterns in genetic variability by a new multivariate method. HEREDITY, 101(1), 92-103. doi:10.1038/hdy.2008.34
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Jombart, T. (2008). adegenet: a R package for the multivariate analysis of genetic markers. BIOINFORMATICS, 24(11), 1403-1405. doi:10.1093/bioinformatics/btn129
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Laloe, D., Jombart, T., Dufour, A. -B., & Moazami-Goudarzi, K. (2007). Consensus genetic structuring and typological value of markers using multiple co-inertia analysis. GENETICS SELECTION EVOLUTION, 39(5), 545-567. doi:10.1051/gse:2007021